Scaffold Ga0208601_1007562

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208601_1007562

Scaffold Ga0208601_1007562

Overview

Basic Information
Taxon OID	3300020532 Open in IMG/M
Scaffold ID	Ga0208601_1007562 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 09NOV2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1717
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006618	Metagenome	368	Y
F011756	Metagenome / Metatranscriptome	287	Y
F077230	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208601_10075622	F006618	AGG	MSKMKQHLEKQIIIAHSEEENTGWKRRISFNYQGNNYELTLYWGEFDGYDIVWRFCDGKQMIYTPAWVIEWDEEAHEGMSFEHYLDELTWERTK
Ga0208601_10075624	F011756	GGAG	MSEPRYLFGDDYAYNGGYEELIDCNICKKMFDRVEYRSDTCSDCEDKRVKREKASK
Ga0208601_10075626	F077230	AGGAG	MNKWVRGGLILLVVLGLLSTGHNKLFPPPAGKIPDGVIENRKATQDEKDRNRKLAQEYASAGWDWRGKEWTCLKSLWTR

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