NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208601_1012154

Scaffold Ga0208601_1012154


Overview

Basic Information
Taxon OID3300020532 Open in IMG/M
Scaffold IDGa0208601_1012154 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 09NOV2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1335
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038092Metagenome166Y
F042325Metagenome158Y
F092047Metagenome / Metatranscriptome107N
F103248Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0208601_10121541F042325AGGAMLTIENIQKIEGKKIHTPHAHWIVMGIEERKHDYIIKVRFEYGTTSGAKHPKYVNFKLLRYNEFSSTLNEWKMYNDQDNGYTTLTKGLLNFKMFVGML
Ga0208601_10121542F092047N/AMLTLKNFINIEGTEFQLSSGNKFLIGIAKDEGLHYTFGVFPLAVNGVAIIKDVIVYKLYKDILYGGDYYHGYWLESPKMKRIVKVKPENLTLKNFILELHIQTGMIC
Ga0208601_10121543F103248N/AMLTIKNIHKIINITSPLPYKWYINTVDELPDDLYGFSVLIGNIQEIFYLNRESQYMSGRNEPVYRLYKDFDQSKINRWLSLHQISPYFIKQAIDKMLNE
Ga0208601_10121544F038092N/ATLRQKIQTLQGINNMTPQNNVVQQIRDIAEEQAKIALAELLKQETEKRKQTILTIENIDKIKGHKYSEWLTVGGVMESDTHYEFTLLDEKHTQVETILLHRKQTSDKRYIMEYNNQTLWITKDRLNTIAGIIECMQEI
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