NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208228_1043316

Scaffold Ga0208228_1043316


Overview

Basic Information
Taxon OID3300020535 Open in IMG/M
Scaffold IDGa0208228_1043316 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 25JUL2011 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)695
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013499Metagenome / Metatranscriptome270N
F083681Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0208228_10433162F083681N/AMNVQERIEELDRLKRVASIRKDMCKVIQLLGYRVKVLKLQLALLPSEEKNLIRFQLDNALDETIKVVSKISHNFQKEEKKLISELSHQ
Ga0208228_10433163F013499N/AMSETLKDIRTTISGIKGLVMMLQAYQRDLAGKGEPDPSEGSLETARLAIGQLKEKIETIVGPEEPSGAEGFE

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