Scaffold Ga0207939_1023162

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0207939_1023162

Scaffold Ga0207939_1023162

Overview

Basic Information
Taxon OID	3300020536 Open in IMG/M
Scaffold ID	Ga0207939_1023162 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 02JUN2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	853
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Eukaryota	(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011281	Metagenome / Metatranscriptome	292	Y
F020665	Metagenome / Metatranscriptome	222	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207939_10231621	F011281	GAGG	MSEFKQKVLTASVDRYVLTKTQCEMLRQDAEVIGMKRAPVLSKDGVTRTVSRTRTCSSCWIPFAKHYEWIYNVMREITEGINAEQWRFDIQGIQQLQILRYRPLQKFSWHYDTYTSEAPVRKLTAVVNLSAPEEYIGGGLQAKADMVNPQFIREQGAGC
Ga0207939_10231622	F020665	AGGA	MKKKDRKITLVKTLEQKAVRVMIDIDDDLYEALAKAGRQHLAKDKMACFEYALNKTLLELCEELK

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.