Scaffold Ga0208595

Basic Information
Taxon OID	3300020538 Open in IMG/M
Scaffold ID	Ga0208595_1006982 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 28JUN2011 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020538 Open in IMG/M

Scaffold ID

Ga0208595_1006982 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 28JUN2011 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2295
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

2295

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014823	Metagenome / Metatranscriptome	259	N
F016116	Metagenome / Metatranscriptome	249	N
F021930	Metagenome / Metatranscriptome	216	N
F022867	Metagenome / Metatranscriptome	212	N
F088321	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208595_10069822	F016116	N/A	MVEKLAKHERLALYNLTEREIDQLEEELVKQFPKEQFAETYIEMWQIYRDTKAIQIYNLIEAKYPGSHNEEKRAVIWFEIATLFPHRLHELVKNLREWN
Ga0208595_10069823	F022867	N/A	MELDLQIREQLTSLASNYYNRFWMKSYILSCMVIENAAQNIQLGIIGGKGVTTILEYNIEISRQIDNLSEILRHTNDITPDMVPWMTSILGHMVFLRNTIHGVDINDLVGLLRPLQLIKLGVTESRIGMEEAITNVDKKSLTEKWENELNLPH
Ga0208595_10069824	F088321	N/A	MGERIELTPLEYLHGGLAASDKLRIQISNLIKQEFAKSQNLRARMSKIHSSIKVNQTKANRLSEVFKGDEEVLPLVSRYIANLVQLELITACDNIERMYEAMICLEECQIKI
Ga0208595_10069825	F021930	N/A	MSDQDLRKVTELLREVESEEREKVMEAAEQNLLDSLKSVENITKAIDQLVIKETKRRHDFKDLLTTIKSIVVKSKKETIDGIVEIEKSGNRPSFLAIAEKLAVQLSEIEYIISRQSLEQMEKLMKIVTSEDYEEAREKIDLRFTK
Ga0208595_10069826	F014823	N/A	MSKKSNKSKDGTPILIDYSLYKDMQEDVREGSQAADELTSVVAQIIYKEIKRRKEFRNLLVSVEQTLSTSMRRVHRKVIELRKENSKISKEVLELEFDLERIREVVMSPNLEQMRTLIEDIYDWKVYRQSRSEKETENLQPIAVAEEKVDLPESLEVV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208595_1006982

Overview

Ecosystem & Geography

Associated Families

Sequences