NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208857_1000178

Scaffold Ga0208857_1000178


Overview

Basic Information
Taxon OID3300020542 Open in IMG/M
Scaffold IDGa0208857_1000178 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 05NOV2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15269
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (23.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068425Metagenome124Y
F082106Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0208857_100017828F082106N/AMTIYTIPEFELYYHNQYKRSNMNQAFWNTLPIERFNLNKKKVVKKRKAELTTNHLDLPVNNILQHKETKDAFNTNKFTDLIIAYLKAVHSCNSARRISSEGRYRKGIGYIAGLNKGMEDIQCILRGRLFAIEVKSPTDKISEAQLKRKEAIESDGGNYIVATSFEQLQTEILNLLK
Ga0208857_10001786F068425N/AMSIHQKRLLIGLTNGINNNNMKPQHQLITFAALCLLLIIGLNHCAKDKPKTIPFDYKSEAEMMKKQFGIEQAILLNQLEAANRRLQTANNAKDSIRKRELSLTNTNIALMKKLRDRLPKECDTVFVLCDEIINVKDSSYAALFNAFQLCADGSNIKDSLITNYKAENVTDSTLLVISKQETKQQRRGKVAAWCVGGAMFILWLVVGLK
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