Scaffold Ga0208857

Basic Information
Taxon OID	3300020542 Open in IMG/M
Scaffold ID	Ga0208857_1000817 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 05NOV2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020542 Open in IMG/M

Scaffold ID

Ga0208857_1000817 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 05NOV2012 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5287
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5287

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F006264	Metagenome / Metatranscriptome	377	Y
F016785	Metagenome / Metatranscriptome	244	Y
F040590	Metagenome	161	Y
F099270	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208857_10008171	F016785	AGGA	MLDKQNIIVEYIEAPSGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSEMDSAQANQATEMVKYMINSKNDSYAVIRDWAQDSLLHKNGIIMVSPVREPVTQYKEVEGTRDQLRVFETMAAEKGLTVKRQNMRKIDVDLEAVMQDMMNPDDEPGTVQEEVNEAISANTVYRAKYKMTGFSTSVRIKHVAQHYFVCNPTIPNIQDQDFVGFYDPMTLHECKAQFPYIDLEKMAEHA
Ga0208857_10008173	F006264	N/A	MEDHSSIFRQKLSAQAEACARKTLEWLQKDLQGDRVLQPEDVYYLASAADLLLTMRDAYGKK
Ga0208857_10008174	F001059	AGG	MATYDIEALKADLPTAKDLAQFVYDKVGISLDLVGKPKEDQYMVARNALEGKKVPTDFQTDLNPYIDRKELIPVDEKKKIPSRSTDLPDEGSQVHFFGATNMPHPTDPQSDRKVQINFRKYDNGVITFQVTGPIEQIAVGERVNKFGQKQPEKYSWLDPRTEEILLRRPDGTFTEKGRGLYAFCIGEKGGGIWTLIDRNVMNIAEKNVTNPWA
Ga0208857_10008175	F040590	N/A	MSYGKVISGGKQMTNGLTKGINSKLKGFEDSHKRSQTLATAVGKAFNQNPLSDNHLNNINVAAAKKFTTPKLPTSV
Ga0208857_10008176	F099270	AGG	MSTNFLYAQSPNRTGNVSKHCPTKSGGSTNVTGPKHGVSRPTGQQGAPKATGNIASRNQKVQVSTHADYCGCIKNDGYMDKSTKNYLG
Ga0208857_10008178	F001915	GGAG	MEWTLAHPLHDVDDIVELADVEYGAEADGILERDRNVFRKNVTIAATVQLFDKGREFLAVCRTKPEYKTVVVDGFIDHELTESKLIAYCWFDRGGYATYSNKEISNAKFHHVDLNLPVRQKIKLINEMIDQHILWANSWGIPIICSTSIRKEHDGFMKIHKKRGFTVHGSYAWIKTEDGLKGIK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208857_1000817

Overview

Ecosystem & Geography

Associated Families

Sequences