NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208857_1001397

Scaffold Ga0208857_1001397


Overview

Basic Information
Taxon OID3300020542 Open in IMG/M
Scaffold IDGa0208857_1001397 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 05NOV2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4048
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011740Metagenome287N
F017799Metagenome238N

Sequences

Protein IDFamilyRBSSequence
Ga0208857_10013973F011740N/AVITATYDRAATFDASYDGARSDAGRLSAEIMERLVELHELRMTSAADLCRRLGTLADLSPTMFLVTLRLGSGDVSAVRQSFGEMAAKTGRTRQALHYEWAHEIERVRLVFPALAQLMTDYRQATDEADRPDQEGRE
Ga0208857_10013974F017799GAGGVIDTERNASKAMRQHMTTQQTHDQDQRELEALRFSARAARAITTLEMQRKTITREYGERIKKIRALILILQQRESIGQLGIDGINAVEISPELKKLIHNPVGDLT
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