NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208857_1015467

Scaffold Ga0208857_1015467


Overview

Basic Information
Taxon OID3300020542 Open in IMG/M
Scaffold IDGa0208857_1015467 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 05NOV2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1285
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003541Metagenome / Metatranscriptome480Y
F007116Metagenome / Metatranscriptome357Y

Sequences

Protein IDFamilyRBSSequence
Ga0208857_10154671F003541AGCAGMARLIPRKQIEEQQNISGSLSIQQNVEIGQDAIISGSLFVSKSFFFGNDLNDKSEITGSVFLTGSFTIDGILRTGAPNTILSVTSSNTLDALDTQRYAGILAKDFGANVPTLYVSSTDGD
Ga0208857_10154672F007116N/AMSRRIPNINIDTTQKLRDRLGFKEFVLQVNTDTFIYNYIPSTIELNEDGRLITLTLINKKFIFDILELDDVSDYVDVYLFGVKQPQDKYNVVINGNNIVITFISDVTRLPGEVGVNDFEIKGKIAEIL
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