NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208857_1017120

Scaffold Ga0208857_1017120


Overview

Basic Information
Taxon OID3300020542 Open in IMG/M
Scaffold IDGa0208857_1017120 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 05NOV2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1213
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006265Metagenome / Metatranscriptome377Y
F014501Metagenome / Metatranscriptome262Y

Sequences

Protein IDFamilyRBSSequence
Ga0208857_10171201F006265AGGMDKSVDKYIFINNMSEDQPIYDRPIGPSNVTDHNIRLIVQKYYTPQVDESSKGIILRFIPNRGNVLPEAIVWFEKGKTGFNKKPLSQNVWMMVDCDLRPLHELLHKHFHLSEGDFNVTRTTLSSIAYETISEWAKQS
Ga0208857_10171202F014501GGAMLYLCIVMMMKLISSPTQIKRLNKIMKGKVITCGVNSYYFENLQGYYSLHANKGDNYTTPHLYLKFNITECTAKRHYGNHDTYYIYRGHRRVRSINSSIIYNITQDGVKLFLKHFGIKYYELGKTKIVWPTQK
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