NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207937_1018999

Scaffold Ga0207937_1018999


Overview

Basic Information
Taxon OID3300020544 Open in IMG/M
Scaffold IDGa0207937_1018999 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 04SEP2011 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1176
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043476Metagenome156N
F090574Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0207937_10189993F043476AGGAGGMLTLPTNIDRAEIEAFVNHVTAEVMDGNVDPLSVHIRCKAVVKALESIIERTEELAKDTAATYGKGEFKFHGASVQLREPRDMPDFNHDPVCVELADRLKARHELVKTAFKMADTAAIVDPNTGEVVPVVPVKPAKTTLTVTFR
Ga0207937_10189994F090574N/AMSLEERVEAMVSLSHNNMQLGKVVTLVGQLFQNVSPEVSARLYPVWAEAYRSALQDMQNAYNLGVTEERTKCVAMMSKPNQPNP

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