NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208361_1018399

Scaffold Ga0208361_1018399


Overview

Basic Information
Taxon OID3300020547 Open in IMG/M
Scaffold IDGa0208361_1018399 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 05AUG2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)985
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021046Metagenome / Metatranscriptome220N
F073067Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0208361_10183991F021046N/ANVHEVVYAGFLAKDCLVNEVRILSKFYKVSLIVFKAGNVSYNAVMAANTIITDFFVSNHRLFAREIALEFVENIMTLLFSYDGFWDFVNRLNIHFFYLSYRPQILQILSYHMSLTYGSEHYLEVYRHLPPYISGAEDFSRERGKFFCFVIKREKKVFLFLFFRIGF
Ga0208361_10183992F073067N/AMEPSVRVAPTPTRPGVDERLPRADHLPRVDEAIIPEQLPGVEPLAAGACVNPCLERTDVFGKTSLNLL
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