Scaffold Ga0208856

Basic Information
Taxon OID	3300020548 Open in IMG/M
Scaffold ID	Ga0208856_1001267 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 13JUL2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020548 Open in IMG/M

Scaffold ID

Ga0208856_1001267 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 13JUL2012 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7895
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (72.73%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7895

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (72.73%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003863	Metagenome	464	Y
F004110	Metagenome	452	Y
F013279	Metagenome / Metatranscriptome	272	Y
F017972	Metagenome	237	Y
F020863	Metagenome	221	Y
F075748	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208856_100126712	F003863	GGAGG	MESRQVSGKQAIYHRNYRRARDRALVRLSHLYADEYRQLLVEERELDEQEGKKWVGVADNTRLTITTRTRANAVPDVAGRTDYDRENEGYNGGEA
Ga0208856_100126713	F017972	GGAGG	VRTRHLQLVSSEHSDTTHNRESVRSHFGPVSPGSTTLLAQETLRANQLAQLTELLSSLENVVANLNYKSFEVYDTLCTAIEGVSAALKDTQTELVGTD
Ga0208856_100126714	F013279	N/A	MKYDYKCSQCDSKLTIERSIHEDAKDPGCFDCHLPMARIYDAPGIQFKGRGFYSTGG
Ga0208856_100126716	F004110	AGG	MTELHPVTYDLALSVAISISNRYKNHVERDDVKQECLAWAITRATWISEQMLEPNDDKRRHNEQRIAYQMRRVAERYARKEKALKSGYQTADEVYYESAKLGQLLPFVIASVVDGTVLEQIQQMIQDGQPKGKSSPSEGGNLLATLIDIKRCFLKLDVQDQTLLRLRHFDNYTLQQIAGQLECAVSTADRRCNNSLRKLIELLGGPSPWQ
Ga0208856_10012673	F020863	AGGAG	MSTTMEDLHRLVGVLEELVKPLFEGEEVEDTYESNKRPHLVLQAGSKTYGRAFRIHFSGGSHYGSGHWEPRGFSDYLGGTKAEAERTLRSLIAGIRTGKMISEREGKE
Ga0208856_10012676	F075748	AGGAGG	MNKQEILSIIDSTQNFNQYIGSIDCLHGLALDLVVSVAGVDGEEWTDEECLETIKEIVDLTNAYKNTHDWSN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208856_1001267

Overview

Ecosystem & Geography

Associated Families

Sequences