NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208856_1003280

Scaffold Ga0208856_1003280


Overview

Basic Information
Taxon OID3300020548 Open in IMG/M
Scaffold IDGa0208856_1003280 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13JUL2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3814
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004816Metagenome / Metatranscriptome422Y
F017959Metagenome / Metatranscriptome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0208856_10032801F004816N/AMKFIKYKQVARITLYGFDDLNRNNNSSVFTEPLNSVYYTQNINAGVQVGNNAKRMRFQIQGLDNVKLSEHARFCMESINVPILYDNIYERKSLSQTIVRMSNLSSINCFDSNGNGQTDPVIFTSQTHPSQQRIGTVANNVVYSNTESSPVFYNPYPEMLYNFPISSNFLNNRYIDLTITLQFTQGDFIE
Ga0208856_10032806F017959N/ALGIVTIELVLAPASILMQGRKNENQAAVAVNQAAPFRNEVNRTNIGAATAAIGAAIPAEPASYTLSDLQFRIVRYLMPREFYDSIANTLGNGGVYKLWFPNYSVYTGNPVLATNKNCTTSFSISTKSLDYVIGTFRLPNYDVEGPVLNTRLSPINSLEYGATFGTADNQIDAGLRRVYNQSKYFAHNGDSIKTTQWKIGNTPYEAQDLKEQFNSLLQHFNIHQDTLSGMYPGINSIGAFREHSYASIVSLNIPGESEMYTVSGLDTEQTPATVEWKVVSEAFTANNITTADNCTPYLIAAYNSHLEIKAGRVISLIP
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