NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207942_1001222

Scaffold Ga0207942_1001222


Overview

Basic Information
Taxon OID3300020549 Open in IMG/M
Scaffold IDGa0207942_1001222 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 12OCT2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5132
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020667Metagenome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0207942_10012221F020667N/AILNQGGGWFQAPWWRLGPSIYVKKMVDLIFTEAGFRYSSTFFNSSLFNKLVIPYAAGTMPINLSGSNILAQSTGNVNFMEDANTTILFSKDTPAPFYDNPGYWVASSSTFVAPAVPTRWNVDVTLTVSGNFAVGAGFTCNMSIRNITDSTDNAVITNINARTQQQFIVRFQNVTIPANTTANIGFVITQDISVLQTQFSILSGATVQWTCLENPQSIGVLDMRTALPADVKQSDLLQDLQKMFNLQFMPDPQDPKLLYIEPWKDFYSSGSLDWTQKADENAEQNITNGDPNAYTNVMFKYKDMGDYLSKTYKQSYPLAREGYGGRIFNTSNFYGKGDKVVETLCGTLIPASFSTDKIVGRTWDIDGTLASGTVKALQTGYRLAQYNLIEGQTEWAYQYGVSGNTALSVGILRMPFVSHIDNPYAPNVDLAFGQPRLVYYNAVNASGSPYAYTNNNLYNTYWLNYINETVSQEALQLELTMMLSSVDIYQLDFRKPIYYGGIRWRLLEIRDYLVGQMKPCRVTLRRILNLTDFAATTTTPPANDPSALFNGPIDPDPVDPGYEAPVNPELPSEG
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