NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207942_1024054

Scaffold Ga0207942_1024054


Overview

Basic Information
Taxon OID3300020549 Open in IMG/M
Scaffold IDGa0207942_1024054 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 12OCT2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)773
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022399Metagenome214Y
F053253Metagenome141Y
F084156Metagenome / Metatranscriptome112N
F093851Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0207942_10240541F022399N/AYKSIYSKNGLEVFVNPEDYWADYKVRLNGYHAKTFKGETAWMDVTRFVHDQAMEFYDFDVDGIHRQWKTDLIEEIERRFSDAGL
Ga0207942_10240542F093851AGGAGMQDYKYIDTDLDDMIYALDSVLTTINSDDDPWLYNNTWRAMELLKGLKVKGFGND
Ga0207942_10240543F084156AGGAMIDLCWYDTKQGDNCQWECSDIPGLFYCNNCDRLRQWNRFAQAYSYYVREGHYA
Ga0207942_10240544F053253GAGGMLDFDLEYPLEKILTNMLDSVEGHVRDCDCVNCNSLEVLYYMIKVEE
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