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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020551 Open in IMG/M |
| Scaffold ID | Ga0208360_1000130 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 27JUL2010 deep hole epilimnion ns (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 22652 |
| Total Scaffold Genes | 38 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (73.68%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011761 | Metagenome / Metatranscriptome | 287 | Y |
| F026558 | Metagenome | 197 | Y |
| F057213 | Metagenome / Metatranscriptome | 136 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208360_100013015 | F011761 | AGGAG | MAYVLGGGNNEADGFTTAIANFALRAMHESTGLVEFTQVVAPNQGNQYLVPNFAPITYQDYNPAGSSTGDGFGSPPLAVEQNPSLGQGSITATPAVAATAFDVFYAWTTSFELAATLGAELGESYGEKVDIRVCQAFLSFKATPGNTNYSPTPADGFARPTQLGAMELLTAGLPSNTAGWTNGFTSASVLELVRNVKQNYKVARLPGTPIIVLDSNGDAPTPLTTATAGQDGSSLNRMLAELTGGAVSQSGGSNLSALGNELLSTGRIESVYGCAVIFTTFLPSANRVLLGQQSTSPVLVGGYFHETAIFTVLKEGLQIKMGEKPGGLQMWLTGLAYMGAGVADPRRGGAINIYQQ |
| Ga0208360_100013016 | F057213 | AGGA | MLENQLDGSVSAPDAEQVTNDAGDGKVNPGVIRKSTTNSILNALSQASGQNFESVEAALAYVARTSSQQRGGNAQPMESEPTENSRIGRDVGDDSTDLRDQFMRLQRDLAQKDRALRMKELDTEILRNMGDRFDNDLQDYALQKIKSNLQFKRDGSYAIINQKGQERYGMDGNPLSLKGLVEEVAQGNPKLLKQNSLSSGSGLRPGQSQFAGAPPDQIPDYSKDPAAFNAWAQRNGLGKRIGLKAAGVTATVSTASRKIV |
| Ga0208360_100013017 | F026558 | N/A | MNVHELTHKSPIYNAVYEQMLAYQYAYLGGQIFKTYVRKKRPSEDSNLYIDLVNNTVAQPICRYIVDTINDVLFEPGIKRELKFCTPAGQYINPDNTEWAQLMLLDSDLQNRSMDSFMEQVGDLTSIYGYCWVFVDMPKQDEGNLGRPYVVAVNPLNVWNWEWEWFGGKPMVKHVKILEAEDKDNYYLKCYHLGTDEYPSYWKNYRVGKNVSKNDVEEIGTGTYPAGMSIPGFIAYGRRDPRTMDLGVSDIDSASDAQREHYKLECEAYTSIQFAKTIIRADKGVSIPVHAGAIVRASQGQVESIPVDTGDVDKVTSRQREILEQIEALTGLGGLRNTKNQIASGVAIIEERKTLHRLAKSKARLMEVTEELIFTYAARFMGMRWAGEVHYNTDYEAHDTNYRLALMGQAKAMVQNNPIIDSLITKEIIGMLAPAEKIPQYEQAYIETIQDQQVKDLMTQDNEQVLSRDLGDQISTPEEFGETEPMYGDDTEYDSAGDYGVGYNDVGIGTPVTYTGQSYYTNQAIATQLQGINTGR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |