NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208360_1000621

Scaffold Ga0208360_1000621


Overview

Basic Information
Taxon OID3300020551 Open in IMG/M
Scaffold IDGa0208360_1000621 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 27JUL2010 deep hole epilimnion ns (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8015
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000710Metagenome / Metatranscriptome925Y
F002259Metagenome / Metatranscriptome577Y
F006697Metagenome / Metatranscriptome366Y

Sequences

Protein IDFamilyRBSSequence
Ga0208360_100062110F006697N/AMANQVSKLAYVDSKLGVSLPGQQTTRVIYDSVNAAAGQQFFQFFTNFAGKTEFQTNLTTNKLDSAESMVIKSVQIIMGSAVSNLADHLNLNITVGNQVVLKDFDPSFNCSSRGLSFDRLHSGFNSTTNLEVRLLTEIVIPPQVNFKAELQISNALLAANDDVTIILKGYGRIFSAGNSF
Ga0208360_100062111F002259N/AMGMSAQDKMLNVASRLGLTTLKDMQGTTRMVYDSQTTAALTHTFFKGASQRAFPLSNVGANGNQFQVNEALLVEKIGFFLPQAADGIAYTGAGAFDISIKFDLVIGNKTVIKDATVEAGGEQAFYNDGTVASSVIDLEGVGILIPPQVEYYVIAKAFNSNSRAASSTRLGCYLFGTGALLNFNTTI
Ga0208360_10006219F000710N/AMATNMNISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGIILSSTTSAAPATIINATQLRVTLTINNDVVIDDVVAHELGASVATGITTGFPAFIPFPRALTGQDTILLRVTNSSGASQLLNATVYYKNEI
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