NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208360_1000933

Scaffold Ga0208360_1000933


Overview

Basic Information
Taxon OID3300020551 Open in IMG/M
Scaffold IDGa0208360_1000933 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 27JUL2010 deep hole epilimnion ns (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6170
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033008Metagenome / Metatranscriptome178Y
F104776Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0208360_10009331F033008N/AHLMAIFRTPTDNFVTPILAEYDIRGNRLSEEQRLANRLARHCAPTARGRNVYLLTNGTYTEIQPSNMTTVAKVYYGGHDIEVTDAEVTSLTAAGYGSNIS
Ga0208360_10009337F104776N/AMTYDLAGMRTGSVFEIDSELFYVWESSSGAKTVVVERGYGGTTAAAHTANTVVQLNPRFPKAQMLESLNQDIEDLASPLNGLFRVVSTDVDYNGSDRQVNLTGATNVIDLVDVRLRYLASDYPVLRGVRLQRDLPTSDFASGYALVFDEQVMAGTLRVRHKAQFSRVSAIGDSLQSVANVPTSMEDILEMGVMSRMLSSREVKRNFIESQGDTRRSDEVPAGSMANSFTNILRLRRDRIIAEAAKLARQYPLTIRV
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