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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020551 Open in IMG/M |
| Scaffold ID | Ga0208360_1003846 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 27JUL2010 deep hole epilimnion ns (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2437 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005697 | Metagenome / Metatranscriptome | 392 | Y |
| F009503 | Metagenome / Metatranscriptome | 317 | Y |
| F014089 | Metagenome / Metatranscriptome | 266 | Y |
| F021065 | Metagenome / Metatranscriptome | 220 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208360_10038463 | F009503 | AGGAG | METIQFECRKCKKMTKQLIHKITDNLPNGVEVIQCTKCEVMGVAQIGSSNADL |
| Ga0208360_10038464 | F021065 | GGGGG | VKMTLTRAEEFVCHKAALELAKDNNDYWQTREGGYSMDKSFHDLIAQDAQSIGSEWVVAKYLDLPFNPYENKYKMKADVGSHFEVRWTKYVAGHLVVHEYDRPSDVAILVTGESPNYFIAGWIPIAMAKRPKYRHTKQPNWWVTQINLQPIENLRRSNYGNNPV |
| Ga0208360_10038465 | F014089 | GGAG | MSDLVEIIYPQSMTAKLLQDGEVIAEYKVAQCDGCAKVMKLDPFGYKIGQGGEKLAWLCGGCR |
| Ga0208360_10038466 | F005697 | AGGCGG | MGFLDNYEASRERLERWLATYPKGRIETRIVEFNAEKGYVLVEAKAFRNDTDLHPAGIDYAYGYQGAYQQNMKRWFVEDTTTSAIMRCQQLVMGGAERSTREIMEQVERTPAKVANADSTDYWTTKFGDVPSYKTAAEAEQSGVPSLGSSMDEIAKQLGGELVQEAPQCSHGHMIWKQSAQGSPKNWGGYFCTEKTKATQCTPRWYVLRSTGKWEPQV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |