NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208855_1005476

Scaffold Ga0208855_1005476


Overview

Basic Information
Taxon OID3300020553 Open in IMG/M
Scaffold IDGa0208855_1005476 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 17MAY2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2346
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019600Metagenome / Metatranscriptome228N
F031767Metagenome / Metatranscriptome181N
F033705Metagenome / Metatranscriptome176N
F100445Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0208855_10054761F031767GGAMNNNPTNQQKIIVKRLERKPRQNYVKTLASLKSIVEETDKLYNQFDSQEQALRKRVSGCQEWTRYWTRGGNLSKKEKSLMYYLEDISNRLIRISDMKNLEEKERLLYYLKVEISLETLHNEKYQK
Ga0208855_10054762F019600N/AMYTPDRNTSKLEVGYNLEKSLKEARETVYEGRKAVEDLTSSITQLVYEEDRRRKEFTEILAAIQAVLDTVQNKSIAAYQRYNGDAILTSNLKALNSEILKTTSLVSSSDIGEMKEIIEKLANWELNEQ
Ga0208855_10054763F033705N/AMEDPVVAIHPLDYLFQGLEAAEVLKLHLVSLIKEEANRLRNLKLKLNSIRKLVEVNQTNSRKLVQIFQEDQNIMPLVAKFITILTELDEISACNTISEMIGVLNKISECILQIEIHLN
Ga0208855_10054764F100445N/AMTPIVNEAQAKLIPLAFDLNNRIWMEGYVLCCSFLENAAQILQIQIMDGQGFETMIEYDVELNTHINQVLNILNKEQSITPDMTVWVMSLLNHMLYLKNIVFNPDPSDLIKFIKPLQIIKLNIKESRVLMEGALTWVDKKMMMQ
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