NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208855_1006240

Scaffold Ga0208855_1006240


Overview

Basic Information
Taxon OID3300020553 Open in IMG/M
Scaffold IDGa0208855_1006240 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 17MAY2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2147
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036239Metagenome / Metatranscriptome170Y
F053288Metagenome141N

Sequences

Protein IDFamilyRBSSequence
Ga0208855_10062403F053288N/AMITIKNYNSDVGYGTFYGWDMKYALEDKDFYSFEFEHRNEQKRVYVLVHRNKLKSKKRAAASPKIGDLHEVYIQDMVGDRWRRTVNLEKRSLNKSPFYNWVESVIDDEYGLPF
Ga0208855_10062404F036239N/AMKIKGWEKISGFTYKGYCIVNPIHDANEEGYFATVLNLNQVYRPKWDITLSAYAVKGVVTFSILDNVTQHLLAKSHLTKTNIDTLQKFREQYEMLVDDILEEAQSYVKKATTNINGGTTGIINQVQSAGTNVLYGSSSLSTNTPAHLIQTLQTLQQQIDDYNKKL
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