NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208599_1013516

Scaffold Ga0208599_1013516


Overview

Basic Information
Taxon OID3300020554 Open in IMG/M
Scaffold IDGa0208599_1013516 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 17AUG2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1366
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007751Metagenome / Metatranscriptome345Y
F010836Metagenome / Metatranscriptome298Y

Sequences

Protein IDFamilyRBSSequence
Ga0208599_10135162F010836N/AMATSNFHNVNASAIFAVPLENEYDYEDLVCNLESELGNNPDYVDYGKTDKNELRSFPSRTLGSIRKYHQYKDFYVEVCVTPVIRSGYYSGVNLDWNVDYAINGDIYDIDELENGIGYNTALPISKIKVYSSLAEKKAEKLKNEIVEQLESIYNNYSDRYGVTAVFSNGETIYHKL
Ga0208599_10135163F007751N/AMNQIEELKSVIGKDVSQNQSPTCRARLVKVNKVNCIFESVPSPYDKFPKPEFVGVKYKVPNWIAWNSFFY
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