NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208486_1000604

Scaffold Ga0208486_1000604


Overview

Basic Information
Taxon OID3300020556 Open in IMG/M
Scaffold IDGa0208486_1000604 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 03AUG2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7763
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001515Metagenome / Metatranscriptome679Y
F001531Metagenome / Metatranscriptome676Y
F008808Metagenome327Y
F041080Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0208486_100060412F001531AGAAGGVDWSRIEPWDYIVINVASEYHRKFDMVEAEDIKQSLYEWFIDHPNKLTEWEAIGHKDAKNLLYRSLRNQALDYCQRWKAKTVGYEKDDLFYYEPELVEALLPAVLRVDYSITHKLNLGRTGKPTAPNEGGNLPVMMIEIDYAYWKLNAEDRKLLFFRHAEAMDFKEIANLLSLGTDDAARMRHKRAMRRLINKIGGFRPYRDEDTKDSTETEESQSTVSEE
Ga0208486_100060413F001515N/AMTNKSSFDLDFGFGRKGEQLVDELLTGGRTVEVKRDRKWAKTNNLYIETECYFKKIEGWGPSGLMVTEAAYWAFVLEESTLIVPTAALRWCVTEFGREITCNIPPNISKGYLITVDDLMSATRLYKKATSGLVKN
Ga0208486_100060415F008808AGCAGGMSDSTEKCPECGEHFDNAFEAIDHILEDDEDFDPALILPNGYRLMIGSLLRCMYRYADEPEQIRKITQSTFLTLFTAETQPSVMKDVVEDMIVDSSMMDLDDELKNLLADGA
Ga0208486_10006042F041080GAGGMSTNATILGLAEELRLIADEISYNAFDTTSEYHKRGTIIKALPEEQQDRFNPQSLWVSLGDGTYKHLNGKKGLVTTHSRLADVTSVVFEA
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