NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208362_1005964

Scaffold Ga0208362_1005964


Overview

Basic Information
Taxon OID3300020558 Open in IMG/M
Scaffold IDGa0208362_1005964 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13OCT2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2853
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060615Metagenome132N

Sequences

Protein IDFamilyRBSSequence
Ga0208362_10059643F060615N/AMYKIFLQEGKKEDAIQKVKEMFSSPEDTEMIDKIFDATSSLGTKFIPFVENETKRYLIDQNTDINDFINLLVNRIRSFIKNNAKITSEVIGTTKELWDGIESRAFPKLDVVLNAPKDINSYNIDTLGYLTQALSMISSKREKEREAKKEAERVFEDGDVIGIRAITHNASCYYGSGTRWCTAGQQPDYFNKYTKDGKLYYFIDKSNRRQKIALYIKDGDPTVYDAADTGHDVEFLYHVYPEVENFVIEKLLGGGKVKSGFERIKDGTISSWNADRVDPLITSYNRDDEDNVTLNLDFNGRDSDYFDLFEWNEGDGDRMYLDIALSSYGTGEIFDSYYAEEEWREGYMFPNFDDEQMKRLQTYMKIINPKLYECTLGLKEYGNDDCKIKVSEFLSKTFENAVDNIISEYTYDMNADTEQGIREYLETDYSNMFAEYGLPMTGTFYKKTVKLDDLIKTYQKYNPKFNVGIYGLLRRIINLENIDPPSIADSVYEFRTNNYEYSSTNSAIEKLLDTMEETINENENITGNYIDHYDFIKKLGGFDEWIDMPGDKRYMIKITDLDMEDDRVTFALQNTETRDFKKMRLPFEKFKDFIYNLQLFX
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