NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208852_1006464

Scaffold Ga0208852_1006464


Overview

Basic Information
Taxon OID3300020560 Open in IMG/M
Scaffold IDGa0208852_1006464 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 18JUN2009 deep hole epilimnion ns (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2593
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004154Metagenome / Metatranscriptome450Y
F005349Metagenome / Metatranscriptome403Y
F095483Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0208852_10064642F004154N/AMWNKVKYYVLRYWVAISFLLLAFYFYEPTQSITHCSPNTLSSDTPKTFFGLGEMTLMWILMAIAHSSNACYCDIKSLLKKKKL
Ga0208852_10064643F095483N/AMKKFLKWWKVAGQFWGFVLLIGILCGIMIGFIDEMRVNGWISVLWLVIFFGGASWYAWQMRVHGWVLPKNIKDTH
Ga0208852_10064644F005349N/AMYVIHKQLIPTDTNMGDPNWAKRQIWVLKLNPNDTIDEFETLEDAEVKKNELINSDPTGRIYKISIKNEDGSFSDI
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