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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020562 Open in IMG/M |
| Scaffold ID | Ga0208597_1001356 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 05MAY2012 deep hole epilimnion (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9336 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (40.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001055 | Metagenome / Metatranscriptome | 791 | Y |
| F001725 | Metagenome / Metatranscriptome | 645 | Y |
| F021297 | Metagenome / Metatranscriptome | 219 | Y |
| F077033 | Metagenome | 117 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208597_100135610 | F001725 | N/A | MAAISNGTTCIYGVAGTVSNLFVQSYSLSSSFNSEAMVVDETGITKTHRLDDRKSEITIEGIAKTSSIPVLGATITFTVNTLSAYPSGSASVSFAGVVTKVDDKGTNKGFTSVTVTAVDFEGITYS |
| Ga0208597_100135611 | F001055 | AGG | MGTKSIRHIVEATLATYLSTQTGLTTVAFLTGDSAATQTLPKAVVLCESARSPADLPEGEGNFSCSVRVTLFSNADDTTLADHRARCAALSGNMRDLTSIKAAFVASTDAACYDVTMQSEDEGIDERSWATSFSFDVLVVLPA |
| Ga0208597_100135615 | F077033 | N/A | ADAIAVASALPMSEIPGFEVANAVDADTGLGVQVLMGQEQSGYYNVTATLLFGAAVGRATSLNRLTTA |
| Ga0208597_10013564 | F021297 | AGG | MSCTNQVTVSQGNTFACTFTWTPGATGPANLLTTTISSSLEDRQNNVYAMTVTKAGDGLSFTVTYPGSTADWAIGLGKWDIKFVFSGGTVSRSQIFRVNVIDSVTV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |