NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208597_1015307

Scaffold Ga0208597_1015307


Overview

Basic Information
Taxon OID3300020562 Open in IMG/M
Scaffold IDGa0208597_1015307 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 05MAY2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1878
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000957Metagenome / Metatranscriptome821Y
F003714Metagenome / Metatranscriptome472Y
F024551Metagenome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0208597_10153071F003714N/ANMPNANHPYTETLTFAGRVLPLKRPMAQYAARRLQAILPQIAALNAAGKSQADAAAALDTTVCTLRQWLDITGTQWVNLNKRGPYRRQK
Ga0208597_10153073F024551N/AMPDPSHRPYNPMHIIRPDSLPRLWWLFPWSIARQLHKNAVAIREMADNQSTTITNQANILGRYMDENRNLKAEVTRLSHSREHWIAKHDRAYAVAMHNERVIADMESRIIRGAITPDAYPHE
Ga0208597_10153074F000957N/AMSSFRHLDGMVGLLSEIFEINERILTGDICSNKSAIASTRMKKLLHHYHEALHEDGAVKVSLQAYAAAGGWVGITYSYELDGFEVAGSQVPRRV
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