Scaffold Ga0208082_1005863

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208082_1005863

Scaffold Ga0208082_1005863

Overview

Basic Information
Taxon OID	3300020563 Open in IMG/M
Scaffold ID	Ga0208082_1005863 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 09JUN2009 deep hole epilimnion ns (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3101
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (40.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F094908	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208082_10058638	F094908	GAGG	VCKLMDVKTKWDMVVNDRAFRRKFTGCKGDYDISKCRRIVHPKGTLYVPISDDEGHFMAYEFIGSDVMRVFDPAHPKSQYGGHVDRAHISKLSGRRVVVCKDHPQWHEEDTFCATWTLAWLRPDMRHLTERRGS

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