NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208082_1025583

Scaffold Ga0208082_1025583


Overview

Basic Information
Taxon OID3300020563 Open in IMG/M
Scaffold IDGa0208082_1025583 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 09JUN2009 deep hole epilimnion ns (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1168
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F073145Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0208082_10255831F073145AGGAGGMAQSVGNAKNILVGASPLFLSTVDINDADYIPNADPSNVGIGSAANTVGVPAFAAGVSYANTLNAVNQTAGLFGYRNVGFTNNGLQVTYNPTFDSVTVDQLLDTAKLFKSAMEVMIATEMSEGTLENIVAVFGQS
Ga0208082_10255832F000258GGAGGMTVNYKLDMIHDLRKHLWDELINKAIFDPQDYYSDNIGQEIIPIIPVQQQPELNQFLSGKKHIVYDKIGMSYEDNWAICCEQILFTIYSVEIDEINEIRNLMVDTFRRMDESAKDINNNTSLSKKFKFHSIYMADISNTSPSEESKGFLSTDVIIEVKYSRHLDLDGKFL
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