NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208222_1000045

Scaffold Ga0208222_1000045


Overview

Basic Information
Taxon OID3300020566 Open in IMG/M
Scaffold IDGa0208222_1000045 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13SEP2009 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32866
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (41.27%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021068Metagenome / Metatranscriptome220Y
F022611Metagenome / Metatranscriptome213Y
F034858Metagenome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0208222_10000452F021068AGGMIDSTIYAVCIAGEKVRYTAKSRIVPIMGGSYALTDDEREKLRLEGYVFDDENAFLSGLNSRCGELSCVHWMIRNANEENIGNAQYRRNWIEPQGEWYCPETLYLPEPAQFSCTLEQQFYGGHSAFNAPAITRELADTKEWLFSREEIDQIWAQSLFIGCNMARGPRQSYKQFMGILLSALGPIWLKHKEHFRSIDGYDKRAIAFIAERLITGMVLCRDRILPGVKIATAPIGFIN
Ga0208222_100004526F022611N/AMHAQFMRRTSVVKLRTIPMFGLPERQPFNYGPYKLWPCFSKPEFQWFAAVDGAPHYFRTLNEAKLFIKDRLSVEDAENLCD
Ga0208222_10000455F034858AGGAGMLPPSSVRFCISTCNKFAVHTLPVIIPSLTRAGVSANEILIVNGGQENWQIDHYGDVPMICTPQNSFEYTPLIEIVEHHLISPFWFLLHDTCIAGPAFKSLVYDPPEGFEKVAMKHTPSMSIGLYSMDYLMHHKDRLTAIKNMDSSPQALQAWKQWGVPNEDYMLWKLQDSPTGLYHPDKHGPDEWNYQGHADVYGTGMPRRIEYFPQLDLFKAKSNWQGVQPTLCIDI
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