Scaffold Ga0208222

Basic Information
Taxon OID	3300020566 Open in IMG/M
Scaffold ID	Ga0208222_1000349 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 13SEP2009 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020566 Open in IMG/M

Scaffold ID

Ga0208222_1000349 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 13SEP2009 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13307
Total Scaffold Genes	48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (52.08%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

13307

Total Scaffold Genes

48 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (52.08%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F000919	Metagenome / Metatranscriptome	834	Y
F014121	Metagenome / Metatranscriptome	265	Y
F025022	Metagenome / Metatranscriptome	203	Y
F035276	Metagenome / Metatranscriptome	172	Y
F037722	Metagenome / Metatranscriptome	167	Y
F048267	Metagenome / Metatranscriptome	148	Y
F099175	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208222_100034912	F000345	N/A	MNELGKSLKEWWDSDACKKLQKDMEESVQKSVGKYFMLSEDEKLDMVQAICYIMCKAEQAGTSHRGLQDALGIYPAGFWISELMDVHNSLYSYYHDKKQNEELEKDIEVLQKFTET
Ga0208222_100034916	F025022	N/A	MELTVVAIKREDCLYHFDHPHNDTVEELLLNGTEEAIDEHCYFKTGKYPIEGDEVEISLFLEEPADYDTLLVKEVSDEEGTTYTDTTMCVPVWLCPWLQGYFGKVPEEIYIKVRPINKGLEAFVKATGMRQFLN
Ga0208222_10003493	F099175	N/A	MVIEGKSMIQNIEELMLLEHHQELKQFAEYLGVDYEDYLEFLHPDVDFDDISR
Ga0208222_100034936	F000919	GAGG	MRFRNIEFRWSKCNNKYELVKWYQSNGSGQENCYVIAFFDKDKECYNMRTIGDRFFEDKDAWVVGKYGLEFLNEIFEIERIEEELK
Ga0208222_100034942	F037722	GAG	MTKHEIVETIGFYIFVGLMGWALVSFFSLTWAQALIISWMYNKLIDVLQ
Ga0208222_100034944	F014121	GGAG	MTDAAYKVWEAFKAELIVEPTDDMKEALATAIRVISSIIHRDGVLENEPWHLHIAQELNEISYDVEAL
Ga0208222_100034947	F035276	GGAGG	MSKSYISCYNNETKELEHFEVSYSIFVYIRQLEEEIKYASGGVKRLYPFRFGDEE
Ga0208222_100034948	F048267	GGAG	MTNEEWETALKSMNENVKKWVDEEIDKIKYNIIKDIINEDLE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208222_1000349

Overview

Ecosystem & Geography

Associated Families

Sequences