NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208229_1015053

Scaffold Ga0208229_1015053


Overview

Basic Information
Taxon OID3300020569 Open in IMG/M
Scaffold IDGa0208229_1015053 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 22AUG2011 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1399
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000847Metagenome / Metatranscriptome861N
F001129Metagenome / Metatranscriptome768Y
F014844Metagenome / Metatranscriptome259Y

Sequences

Protein IDFamilyRBSSequence
Ga0208229_10150531F000847N/AMSWIKIKQALLDLANNHPQVNSFGTGDPLAVGTDNTINLRTPSRERIVYPLVFADVQSANTDAGTLDLVVGVYFSDRVESIKPMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISSLTNDPNEDWTLSASVNLTRFVESRDDRTAGWQATMTFEIPFGHSVCEIPV
Ga0208229_10150532F001129N/AMLGQGGTMEFVDAAVSGKNYDFLVVNTAATFTTLTGTGSENLLTAYALSGKSVSAGIVISGRNGGKITAVTLSAGSVIGYTFL
Ga0208229_10150533F014844N/AMIIGYGYGYPTNMLIGGLAAGVWGAFNARATADGATAAEAAVNGCLFVRFAAIFNF
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