NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208465_1000650

Scaffold Ga0208465_1000650


Overview

Basic Information
Taxon OID3300020570 Open in IMG/M
Scaffold IDGa0208465_1000650 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 31AUG2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8859
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (80.00%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F000450Metagenome / Metatranscriptome1126Y
F002071Metagenome / Metatranscriptome596Y
F007470Metagenome / Metatranscriptome350Y
F029721Metagenome / Metatranscriptome187Y
F038643Metagenome / Metatranscriptome165Y
F047643Metagenome / Metatranscriptome149Y
F091920Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0208465_100065011F091920N/AMRNRFRIEIYDANKANDITIYSEQGVDKDYLTELVFSNLSNFSGAIKAYVYDELKKKKTVALFIHETTVDKYKRKQLTRLELGLI
Ga0208465_100065013F002071AGGAMLEIGQTYTTTQSGIVGIVKAIDNHPSGVNRILLDVNGKERWTSAPAN
Ga0208465_100065016F038643AGGMTDTTNWAKYPFTVDGVEFVSLLDPNGSMYQQVSRIPASLFTTMNEGAIREIVGKVSLMSKSEIQAELDRVNDGYSQAYLALA
Ga0208465_10006502F000450AGGCGGMGDRANFVFVQPSGETIVLYGHWAGHNMLEHLGEAVAKAQSRWTDPSYATRIAISQMIGDGWGGETGWGLQVNEISDNEHKIPVINWLDQTFSLHEEDSHYNESNKVRGMKNDAIFTMDLRTFVEKYTDAKLLV
Ga0208465_100065022F029721AGGAMRTYSIEDLLVGQFYRPTSYARRFFGGEINFAEKRDDVWVGTDYQAYSIRYRVGQSVKNEWATIAVKVADL
Ga0208465_100065023F000447AGGAMGFIEFARIDENGVEWVNLENATNDELLDFEIALFQEGAL
Ga0208465_10006504F007470AGGAGMDYQDGFEDGVKFAREVIVNNIRLWAETSEDGQAYDDIADRIEFGTVDYDL
Ga0208465_10006505F047643N/AMYYQLQAPTSAACKAAYWEAEFSGLDPYYIESNVFELGTGNIEKVSALISKYSLDILVESDYQPTGYTRR
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