NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208465_1002857

Scaffold Ga0208465_1002857


Overview

Basic Information
Taxon OID3300020570 Open in IMG/M
Scaffold IDGa0208465_1002857 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 31AUG2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3124
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046201Metagenome151Y
F053094Metagenome / Metatranscriptome141N
F093342Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0208465_10028572F053094N/AMADATTISGSVMFIEYSDSPSSARKSAVCQSEGSFDGSRNVVSDETNCGTLKVLGPQNNRFTLNAVVDTIPDANEASFNDFQTLYANNTKKYWHLTDSAETIYHGGYGWISALGQQNVSGQTAKFTMTIEIEGDIDTEPAS
Ga0208465_10028573F093342N/AMKQITHTIGGKEVTLDVGKMWFSKFYGEATSSDPLLMSELLSKPDKQFDFICGLVYGGLNCYNKVNGIKEFISIEQVQDWVGAMDETDAASLINKFVEANKPKDQGEAPTQVANP
Ga0208465_10028574F046201GGAMRSEAFGQIGLLPVDFYGLEVDEYLLLRKGYIEKVKTESVLLRFQTALICEALIGKGNGARFVMDSWQLESKTDLDQEQIRALLKAKKEREALRRLKTKQNG
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