NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208465_1003062

Scaffold Ga0208465_1003062


Overview

Basic Information
Taxon OID3300020570 Open in IMG/M
Scaffold IDGa0208465_1003062 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 31AUG2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2977
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002540Metagenome / Metatranscriptome550Y
F012767Metagenome277Y

Sequences

Protein IDFamilyRBSSequence
Ga0208465_10030622F012767GGAMRGDTATISLTAFRADWATHMPMRALCERWTISRDQVIRLAVVWQLPRRHDRKLRAKPVRQRDPTTTEIRDACLQIQATWSDDTREDRRVTKTRHVSIQRIPLDHETKEAAGYDGDADLWEANR
Ga0208465_10030624F002540AGGAGGMPDYGATPQELEQYGNGLNLWQSLMLLQRWAPLIGYGQRFMAEPDPYRRSLVVADAVEWLAAQTHARVDDELVNKLAAVLKTPQGEALVRWVMSQVEAVR
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