NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208465_1004758

Scaffold Ga0208465_1004758


Overview

Basic Information
Taxon OID3300020570 Open in IMG/M
Scaffold IDGa0208465_1004758 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 31AUG2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2191
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046201Metagenome151Y
F093342Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0208465_10047585F093342N/AMKQITHTIGGKEVTLDVGKMWFSKFYGEATSSDPLLMSELLSKPDKQFDFICGLVYGGLNCYNKVNGIKDFIPIEQVQDWVGAMDETDAASLINKFVEANKPKDQGEDPAQVANP
Ga0208465_10047586F046201GGAMRSEAFGQIGLLPVDFYGLEVDEYLLLRKGYIEKVKTESLLLRFQTALICEALIGKGNGARFVMDSWQLESKEDISQEQIRALLKAKKEKEALKR
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