NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207909_1012893

Scaffold Ga0207909_1012893


Overview

Basic Information
Taxon OID3300020572 Open in IMG/M
Scaffold IDGa0207909_1012893 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 05MAY2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1624
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025657Metagenome / Metatranscriptome200N
F067403Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0207909_10128931F025657N/ANLKEKLKDLKCHKYVITNPYRHLYCCPEHYDVTYYGNILRAQNAANSCLIKTLKAAAVILKVEKIIGLNCKEKRKGYPDHMIDSVHLKQKFYLKAAENLCKIIAEKSSSC
Ga0207909_10128932F067403N/AMLVFIKLTVIFQLTKIQNFLSEYALELASTDFDKIYSRNGAVQYEDYTVIHHSGTFHANSFRKLCINDYTTPFRVTKNMNLTDIFTTYAIQEAWVDLYRSKVSGLLLDKTDYPPVIITVDAEIDAARVHTPAAGSIPNNVLETHYVLGSTRATVVPSSGKTMSFFYKPVYNTSIETIADGLASIIPHMSSVMCLKANQYPNTPKTKKALEDLVNLMLDQVNKEVTLYKALITEWRFKENAIPIAVPNNYTVNMSLDVDDVVRENMINCNRQKNNLKEGFRFITNPIDLALLMFEHELLLAEIKSIRQDILTPLTNPLSLIDLNNLDETSGTNPTLLKHESLSGFYLQVERRLGYIIPAQGESKINSFGRANPFYKITLMDYLTLGISTFLALGFFVQCSMVTANTFMRWRAERDERIREQERYRFRVNRIER
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