NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208485_1004096

Scaffold Ga0208485_1004096


Overview

Basic Information
Taxon OID3300020573 Open in IMG/M
Scaffold IDGa0208485_1004096 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 17JUL2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3713
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (9.09%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018537Metagenome234Y
F018924Metagenome232N
F059953Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0208485_10040961F059953N/ALYYVVSKGVESHKEFVEIAKRTTPELEKYFDKELSKSIQLLDKIQTVLHNEYQEYQLMDDEPEYDSAGFTEDDRMQEVKSEKKLFTLNNDR
Ga0208485_10040964F018537N/AMASNRTSNYIATIPMKNEEQVLEVKKVLEQIFGWVTLRGRHSDRKSVVKSWGRSRQNDVPWKVAQYIDIYLHHANPNRMRIWKKQGMERKNLSLSDKNVMIARMLGSMGHSLADGVKHTEQSKGIPALQAIKYLQYQTQMQDPKFQRKEMKRKYMNKSYKLQKGDWGYIAQELLDYTYLCNKVSFSQLKSHYDIVMRGNATIQKGGSFIHHLHSLIDMRNAIGRRCGRYLYKDTDGKYKVSNI
Ga0208485_10040965F018924N/AMENIKLVTYKLKQMTNSEKAIAQLFGVLCSIVKSEHTPQATKQATISTFQHLIGEEGSPFLNDELIQLSTAMDNEMQSIVRQLNGDRILNEVITNNINLN
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