NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208485_1014731

Scaffold Ga0208485_1014731


Overview

Basic Information
Taxon OID3300020573 Open in IMG/M
Scaffold IDGa0208485_1014731 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 17JUL2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1685
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Hymenostomatida → Tetrahymenina → Tetrahymenidae → Tetrahymena → Tetrahymena thermophila → Tetrahymena thermophila SB210(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003542Metagenome / Metatranscriptome480Y
F009333Metagenome / Metatranscriptome319Y

Sequences

Protein IDFamilyRBSSequence
Ga0208485_10147312F009333N/AMNNPSNVSRFNRHELFDSEWMDYHTITLRMVENYHINRAESWYTPLYNMLCGVWDGYLYTEMLEVAKGMELPTPLLQRIANTIQFIGTSQK
Ga0208485_10147314F003542GAGMRKKNFDYDLFESKIGYDSVNKQYLIRVYDYLTNEMEYHPAPTWTGIMRKMLGDNPNNCNPSGYYSSVRTCLKEIGVCYFDSTKRCMVKGRNWDRFVSDESWNWFIMRTGSCEYSTIIK
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