Scaffold Ga0208221

Basic Information
Taxon OID	3300020574 Open in IMG/M
Scaffold ID	Ga0208221_1003182 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 26JUN2009 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020574 Open in IMG/M

Scaffold ID

Ga0208221_1003182 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 26JUN2009 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2983
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2983

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040464	Metagenome / Metatranscriptome	161	N
F043229	Metagenome / Metatranscriptome	156	N
F085118	Metagenome / Metatranscriptome	111	N
F096608	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208221_10031821	F043229	N/A	MTQKGVKLEIETIEECGCEPHECYCRRNKEYKKSMKIRNLTTMIGLIEADAPLSFRALERICELKKKIKRIDPEWILIDEVKLLEHQVLSQLDTIDHTIPWNSARNKLRYIDLCQSINKLKIIHPDWEMDLENSKNHYLCRCRSCLEERKMYQQTLDETSLEKSTPYKGSRN
Ga0208221_10031822	F096608	N/A	MNSKIELVKEILQVIDTLTPMEIKTIPESVVFKLYQLKKRIKELDPSWEFNDPYNHYIFRILILLDALEVDETFSLEKHGKICQMMHREVRDIRRTNPLWRMDTSLVVEFINSTPLKEEDREREKDKLPEDLVDKKGSSPFKKY
Ga0208221_10031823	F040464	N/A	MNPTVNPEWLRRGYAFVGQTQEHLKDVLKELTLKMRTMTDKEIERDLRKGLKVTGDITLELSRFVRQGLEQKRTFKGLLGTLIETKNWALIRLILEVTEELKERSSSSSLLFSIAKEILRELQRIQAIIPIKELEQMETSLINIQYWKLTRHLRI
Ga0208221_10031826	F085118	N/A	KCQLMDTILPGRVHLTMQFIDLINDLVHKKYENQYPAWAESIIEVATQLINIDPRWELKTVLLTCGHVVLRNYDCTCDPPFFPLRVREKEFSRLRAKTITINDLIDRRNLLTRKLINTIFERVVEESYSQYKLSWVSEVSKIIRQILNIDPGWELKCIKEQFKCLKIEHKVCKCGQQE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208221_1003182

Overview

Ecosystem & Geography

Associated Families

Sequences