Scaffold Ga0194129_10398724

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0194129_10398724

Scaffold Ga0194129_10398724

Overview

Basic Information
Taxon OID	3300020578 Open in IMG/M
Scaffold ID	Ga0194129_10398724 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015038 Kigoma Deep Cast 35m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	722
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location Name	Tanzania: Lake Tanganyika
Coordinates	Lat. (^o)	-4.9054	Long. (^o)	29.4853	Alt. (m)		Depth (m)	35
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194129_103987242	F000258	GGAG	MTVNYKLDAMLELRKYIWTKLQAAEIFNPDDYYSDNIGETLVPIIPVQQIPDMNQFLSGKDHIVYDKIGVSYDTLWLICNEQILFTVYSTDVSKINEVRNFMIDEFRRMDESAKDVNLSANFNSEKFKFHSIYVADMSPTEPSEELQGFYSADVILEIKYSRNTNSS

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