NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10000003

Scaffold Ga0210407_10000003


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10000003 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)434247
Total Scaffold Genes395 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)258 (65.32%)
Novel Protein Genes13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Associated Families13

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000214Metagenome / Metatranscriptome1570Y
F000299Metagenome / Metatranscriptome1341Y
F000414Metagenome / Metatranscriptome1169Y
F000725Metagenome / Metatranscriptome918Y
F003947Metagenome / Metatranscriptome460Y
F006606Metagenome / Metatranscriptome369Y
F009346Metagenome / Metatranscriptome319Y
F009711Metagenome / Metatranscriptome314Y
F023747Metagenome / Metatranscriptome209Y
F025556Metagenome / Metatranscriptome201Y
F031621Metagenome / Metatranscriptome182Y
F047734Metagenome / Metatranscriptome149Y
F048375Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_10000003127F031621AGGAGGMSANSKKSMTWTFVLILLGMAALYGGSRWLTILIPAAGLVWYIARPMLRTGRN
Ga0210407_10000003132F006606AGGAGMKRILLAVGVAVLLLNTLVIPTVVRADGGGNGGTSCGNVLCKP
Ga0210407_10000003134F009711GGAGMTLAIILVIAAAVALIVILGVALSRSLQLSAGTNLATQIQPIDVEAFRNLIDPAEDDYLRRRLPAAEFRIVRRRRLRAMAAYVHTAGRNAAVLVRMGQAALAAGDVPTVEAARRLVDNALLLRRNAAFALLRIYLALAWPNSGLAAEPVLRGYEKLNGSAMLLGRLQNPATPVRISASL
Ga0210407_10000003151F025556N/AMRESPEGRTIHGPPEWRVRAVNESTVKGWYKVTMDSGEYKAKRTALEDSFETQFEQHGSPDGAALFSRRDEKSATWEYYFTPEAMAFSLDVVKEYAWGKEFAWGQACSGPPANVKGLSLCGGSPGKKYADLAQTSN
Ga0210407_10000003163F009346GGGGGMSFEDALALASRDEGFKATVYAMNTLLIHKGIYTQDEFQALFVEWVEKEQRRKAPEPKRAEATNAFSA
Ga0210407_10000003196F000214AGGMVMKNVYEVLRQKEMELTRLEKEVEALRLVAPLLSEEKEMISDMGKPALATAVNGPQATARISIPAPPSIPAPQAVRAAGWDDTAKRWP
Ga0210407_10000003227F023747AGGAGGMKYPSSALAGTLLLGLAAAVAQQSSTPVRWAEGAPNATSEMKNDTKIEGLKTDDVHIFASIADLKETQYNRVWIQVANHGKTPIDFDPQAVVLVNVVKEKMVAAEVPDKAAKSIEKFGEAKSQEMSSAKCENMAATQCQPAPAQLQVARQISAYSSQQAQWIRDNALTKKTLAPGEEVQGIVVFRKDKKAASYILRCPVGTQIFEFPVTAENKEPSYD
Ga0210407_1000000323F048375N/AMRDREPLEVALRRGNSATPESQAFIPDDMSGQILVLWSERFAPNLQRRFVATAQSPYYLADEQTEPVFELSLSGVTTWEGRPALTQGRIYGVFQNKQAEFEKCYEQIIRYIRRHWRKNPATWMGGYVGPAAGDWFDRGGLLLPNYIPPVRSDWIQRLGEQHPE
Ga0210407_10000003257F000725N/AMTRALQTLRAVQWAMLASILLYAIVGEAVGPIKRALDPSLSYLFTTLGVAIVGVIFVVRRTLVLRAAESLATHPDDDLSLNHWRTGYFATYALCEALALFGLVQRFLGCTWQQSAPYYLGGFVLLFFFRPRLPARV
Ga0210407_10000003365F003947AGGGGGVDFQVNGETYFLSLAEDERRWLVLVESATGTRDVPVYVDDAESDDFKLVVDDKERRKILN
Ga0210407_10000003370F047734N/AMRRRYVLAPEAARDLVQIWRYVKKESSARIADRVEAAIRTRSFR
Ga0210407_1000000382F000299GGGGGMENGQNAIGSLRPVERYDVGHVQEVIRQAHGELRQLLLQRSEIMKRIGTVKQTISGLANLFGDGVLNEELMELVDRKSGGRQPGFTKACRMILMQTGRAMNARDICDYFEQKMPALLARHKDPMASVTTVLNRLVEYGEAQAVLSNGRRAWRWVAEVPEDVSPANGETGLVANVS
Ga0210407_1000000391F000414AGGAGGMSAPSRRPEIRRRRTRKEKIVQLRKRLAAAKTDVDKTRITAKLHKLAILSPGQPLIK
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