NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10000005

Scaffold Ga0210407_10000005


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10000005 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)352099
Total Scaffold Genes286 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)191 (66.78%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000131Metagenome / Metatranscriptome1986Y
F000348Metagenome / Metatranscriptome1250Y
F001343Metagenome / Metatranscriptome719Y
F001399Metagenome / Metatranscriptome705Y
F003336Metagenome / Metatranscriptome493Y
F005270Metagenome / Metatranscriptome406Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_10000005204F003336GGAGMSTNGTAAYGMYPRNVALPEVVCALNSAGFENEDICMVLSPAHPAATVVADAKIVDVEREESATSARMIGWFSEFGAVVIPTVGFFIRSQAFFHSLVIEQNFPALSRGSRTLLGLGFSEGEAKRLDHQLCDVGAMVFVSCQESRKADSALELLRRAGAREAASLEPAKMAAAV
Ga0210407_10000005266F001343AGGAGMKFTTVSKSLMMGLALLLASSAFAATKADLVLQNPTTINGTKLKAGEYKLQWDGSGPNVEVSITQGKKVLAKVPAKVVDLKTASQNNAAVVKTNDDGTSTLAGARFEGKKFAIELGDAGDGMQAGSSK
Ga0210407_10000005277F000348N/AMSLVLRAASDWRPVGQTDAGDRVSVSSVRVLKNNQRLALVRVEFKEPAELPQGGPFVEMRARVRFNCASGGAAPTTEWFYSRDHSGRFVVSKKATHDDEFGKNPEGGFVDLVSKNVCGQS
Ga0210407_1000000551F000131GGAGGMGSWVAAEGNRMGKYLSRIRFLRRWVALGFVGLFLGLPLHGEPISLQALVTPSTVIQKDGHTVTFAVHGFIEFESLAQLFPYIDSQTRRWKGSADLSDGARQNLGRDLLRRGIESRVISMADERPLETLITHTREELQHALSRVKEPMPPGYADEFLAVQEKWKHSLNCWSAAPSIAARVLSNWYPIEEGIVLYGATYDSTEHFWQSVKYHPDVTVDDLHALLKVMQTKDWAEWLKRLDDDPKIYLPNAYAVEFLRHNLASQRLRWFGEELERHGVRANHRVRMIQQRGEKPFRFSGFEEKVLWGDLADVFHLVYILSPPDDPIRKTLESQHFDGIYLGTRKMGFISEEFRSLMLEIWKVKFLQLPRFGEVIRSIPMEIRLSHFLNDGDSPDIPIPVYVEYLNQIREMARANGR
Ga0210407_1000000583F005270AGGAGMNPIINSTPNDEVSDADLASVVASLEPDQLISAKEKHHCPRRRLTRTEMVVFWALRFYLVFMFGVVIYQVWTGAR
Ga0210407_1000000595F001399GGAGGMKLNDSISTYDVAEALQGETGKFEVTSPTGERYFVTCQPGHSIVSLEWAGTEPNLQPFLVRKVAQPITTEGRTKRSAAA
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