Basic Information | |
---|---|
Taxon OID | 3300020579 Open in IMG/M |
Scaffold ID | Ga0210407_10000013 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 267774 |
Total Scaffold Genes | 225 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 144 (64.00%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
Associated Families | 6 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Massachusetts | |||||||
Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000515 | Metagenome / Metatranscriptome | 1062 | Y |
F000867 | Metagenome / Metatranscriptome | 854 | Y |
F036390 | Metagenome / Metatranscriptome | 170 | Y |
F040754 | Metagenome / Metatranscriptome | 161 | Y |
F043019 | Metagenome / Metatranscriptome | 157 | Y |
F089215 | Metagenome / Metatranscriptome | 109 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0210407_10000013101 | F089215 | GGAGG | VHSPTKILLTASLLLISLGMWAQESDHPSDSDLLARLSYANSTVVQSAGVHHVCVAVTRDGDYRMVRSTDDGQTLRLRGKMPKEQFQQLTKLLEESEFRALSGYHGGLIRQDAESFSAELQGPMWEHADGTRRWMERDVWRLQWLNADGESPFPGSVAKVVDWLQRFQPVGGKSFLYAEFPDVCPTGGLRLVQPAVAANRHP |
Ga0210407_10000013139 | F043019 | GGA | MLAARKFGITCPICKRFCKIGYIEIEDTASVGELRAKLLQQGWKGESARCDSLKCEGEIFCSFNLAIFER |
Ga0210407_10000013166 | F000867 | N/A | MSPRRVPHFSRVLGARSGGVLNAIALTALLLLTACSPRDFLTHRLATDLISASDPFRIPQQFALQTGIVSNKNYVSPEYLILQQHGWISATAARCLPGMEPPPCWDVLLTPSGVETVRALVPAEEANQTSFFIPVARRELVAVTGISKQGSLADVDFTWRWVPLNEVGAALYSGDLHYNSTVGFRDYDDGWRMVVAPTTPRPGQPLDDALKNAEPVQ |
Ga0210407_10000013199 | F040754 | N/A | MATLSSEPFAGAVPNPRSEVFKRILRSRWTFVALQVLDLFTTLVAFHFGAFEMNPLVARLTVQFGWLRGVLISKLIAVAIAMGVRKRLWIVNILYTAIVAWNLMVIIGLFLRGK |
Ga0210407_1000001347 | F036390 | GAGG | MPPIEILSVEEASESAAPTAIPPKDRIPARRRFYALSVRDHVRLLLPFLLAGAVGVLVRAKYPYWGPASELAYFLADALIVAMILGVAFDLFSAKLLVERVSDGLAQTLVGRGLPAEMQGLVRDVVSTDLVRDHYVKSYAFSTPENGRVQVDVEVRYEIRNYSEAVRDYAPELTPETFFQPEFRFLEYGIAGRKIYTFSDQNLASKVEIEDTLGVTRVPRSALPTLSLNPVRAGEKAACQVTWRYGLTVPEQYCDVTDLDEATLGATLHVETLPEELEFVSGCDASLHHEPGSQSWYFERAFLAGQHLRAWWFRRKPQARVPRPRT |
Ga0210407_1000001362 | F000515 | N/A | MTHFPQVHPSRRAARVQLGDSVLAAIRLEDGRRTKAKLQTISVTGGLLQLAQSLAQGDFVEVAFQTQAGPVHGMAEVLTPMRKMDEGVLQPFRFVALEDDDHRRLRTSLDHVVDRKLLGMKASAFSTY |
⦗Top⦘ |