NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10000026

Scaffold Ga0210407_10000026


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10000026 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)221282
Total Scaffold Genes199 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)164 (82.41%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002729Metagenome / Metatranscriptome534Y
F018260Metagenome / Metatranscriptome236Y
F019723Metagenome / Metatranscriptome228Y
F035719Metagenome / Metatranscriptome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_10000026158F018260GAGGMSRIFEELQSARESRSKNGTKASESLGQMELPERRVAPRKGLDLNLAVYGRSSSDAVFYEQAKAISGNANGGVFLFSIPVAEGQDLLLINMVTSDEQICKVVDVRIVDIQSSEVSVSFPEPNGNFWIPFKRPRKG
Ga0210407_1000002654F035719GAGGMGGMEVTIKVPDRLAVEARAHGVSVEVYVQEIVARQAVESTSEQRIQSASTAIDRIIELRKGNKLAGLRTKDLIHEGRKY
Ga0210407_1000002673F002729GGAMTHEPAYERFEVVGPDGNRLEVQFVRAGFLAQGDRPELFFFRITGAGCTCSPPQGKEETVVGISGSSLARFERGRSCLSREQKIDVTGRWLKRQIEAGATLDSRNLYIQDDELANLASELDLTE
Ga0210407_1000002678F019723GGAGGMNSLSSALHYLLIFSGVVSAVLVTLIVYGNALDSREDEEIYLNKREEAMMAGDQPALIRRMNRLARAITVVATITGVTLLASAGIWVYLGLFKS
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