NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10000037

Scaffold Ga0210407_10000037


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10000037 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)188370
Total Scaffold Genes162 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)128 (79.01%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000612Metagenome / Metatranscriptome985Y
F001431Metagenome / Metatranscriptome696Y
F007764Metagenome / Metatranscriptome345Y
F009101Metagenome / Metatranscriptome323Y
F043460Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_1000003716F000612N/AMKDIPIIDQPRWPAIDAESTPAFLEFKLVFKSTEEPVKYEDASRQYRFEGFKATAQLEASVRVPSIDFTFTTDPLESSSCDFAVMGTEANGKYYQS
Ga0210407_1000003753F001431GAGMATIQDVSAEQLAKAFHHYREALVHNGSCQADEEESSPWDRAPQDERKLMVAAVRLALLELATPAAHPTAGRKYYAKPGEADWGC
Ga0210407_1000003766F009101AGGAGMKRSFRISILMVVLVGTFFAAAVQQVPALDGGPLILCPPGSKGCQSTLPPQ
Ga0210407_1000003792F007764N/AMPVTVEMHNTADAESRRDVIAMIEHVLSDRPGDWRVVILGSQANDCWELKITGPNAFERSYTLEGTLGQHEPSTVAAIIARMLPSRS
Ga0210407_1000003795F043460GAGMDVWLQTEKTAKSDPFRFGLTHNPRKATPMSQDNARVAMQGAKRDYPQYTWEMESGFSPGEFMLHGHDNGHAKDGGSRNPVPVLPQKAAPGSFRTEIDELRVEAARLLLESEKNKRAAEKLVERIKRLEKTAH
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