NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10000039

Scaffold Ga0210407_10000039


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10000039 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)187725
Total Scaffold Genes186 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)132 (70.97%)
Novel Protein Genes15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Associated Families15

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000188Metagenome / Metatranscriptome1692Y
F000512Metagenome / Metatranscriptome1064Y
F000775Metagenome / Metatranscriptome896Y
F000781Metagenome / Metatranscriptome895Y
F000885Metagenome / Metatranscriptome849Y
F002853Metagenome / Metatranscriptome526Y
F006229Metagenome / Metatranscriptome378Y
F007488Metagenome / Metatranscriptome350Y
F009917Metagenome311Y
F015120Metagenome / Metatranscriptome257Y
F017859Metagenome / Metatranscriptome238Y
F024591Metagenome205Y
F059669Metagenome133Y
F084509Metagenome112Y
F106044Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0210407_10000039130F000775GGAGGMKNLDSVFAAYLIGWGVFFLFYLTIAKRTSNLRAELDRLKNTLPRAK
Ga0210407_10000039152F009917AGGAMGTSGWTYLVVVFSVGAQLVVFLRWMHRRMRDDEIQRVFVRALALRHLPNIYRALNIIAERQGIKLEEMPSVNYVDLRNGERHHR
Ga0210407_10000039153F002853GGGGGMGRGAQGQTQSLTDNQLNQTNALNQQLLGQQQSVGNLVVPQFQSILNNPGFSVADKAAITGQSQGALASAFDSLQQSATNRAARTGNSAGFSDLTDQLARQKGIAEGNLAQQNQLNFSNTAFQRQMAGLQGLSGLFGVDSNLLWRTLGIPAELLNVRANASRNNGGFFSTLGSSLGGTLGGVPGLFL
Ga0210407_10000039154F007488N/AMKIRAYEERDLEALRAIHARQGFGYAFPDLENPLFLTKLVLGREEGGKGIAGAALLRLTAEAYLLLDPEAGSPREKWQWLLGLHEATRRDALARGLEDVHAWLPPEIAKKFGKRLTRLGWVRDDEWTPYCKRLR
Ga0210407_10000039155F106044GGAGMPNLTSNATWDFNPGDTVTLNASFTFDLQYPNDNQTVSAVLTTLQGRTPHVTLTQTDNATISVVVTI
Ga0210407_10000039156F000781GAGMTVPQEVRAWRSMLTVAQLAPMKDRDPYLYETLVKIVSAVNATSANAGVDPATPSPAPPEIAALKVQAANGWFDLAIMDPAVTRPGLFYFAESDVTPAFSAPRVYFLGASRNLYVQLGNQTLYWRAYSQFVGSLASAPVTFGSPATAVAGGGTSGPAPLPSSGSGALPNGLLRGGNGFGVVPGARVVKQTVL
Ga0210407_10000039157F084509GAGGMPSYANVLPPVSVGFGDSAAVIASTDVIFPAPFKSAQVALAPAFSSGKVRAAVEIVWSAAPGTISLQFQTADTDIDAAYSQEGALISNVNTANVTRAEFPDVVAKFARILIATLTNNVTATAKISS
Ga0210407_10000039159F006229GAGGMNKQSDVVSLVNISTQKWPPRHRTYFGSLTIQSPEAGTAYAVTPVRACTSVMDLGDKRTMEIRLSALEIAEDLVREINGDSGEGSYHGVFVAAGPEPTREELLEAQKKLEEFQRRLVDTADLEWERSHNMMFITDLERRAARELGLEKPWLYDPKPMADCPACGEKIRPGVAVCRTCGAILDREKAAKFGLAEREEKSGEVAKLGDKKATKEK
Ga0210407_10000039165F000512N/AMIEVIRETHETPESVARRLCLAGGMNRYGEANYRVVWGWNRLGWIGGKFEDRDSTGNLVREVVELRREPKYPQVNRWHVERWVPAEAYGSPRAWYAQTMERADGKSVAALGPYPERGEYEHCFTLQGPRGEFVQLTPTIAEHVARAIEWARGRDQASQRAKLYEREEKEERAYEEWAFEVMGSG
Ga0210407_10000039172F015120GGAMFELLMRAFTTRYVGMLEGEVARLRMENRALMNSLLGTAGFPPVEFAEAVKPVELPRMRRRSWQQIQRKNESEAVKGSI
Ga0210407_10000039175F000885AGGAGGMTNAKVVFIGEVSQIAGVASMVGGVVLSLRHWPSAVALVGGLAAYFVGKKLRGQ
Ga0210407_10000039182F000188GGAGGMSVKPEMAFDVCWEVYRGAREVMESKRGIAALNMEMETKYEWRPDVRPKMKDWVADFALAGQAALEGPEWASRMVLFRLYYLGLAPYERARHFLGLSERGWVNWSEEIRRRCGAEILRRGMFPPRKYFNGGE
Ga0210407_10000039184F059669GGAGGVTAYRTQPPWEFLLTASRNTLHSYELSRLAHASNLRKEISSLLDQWLDENANAMVARWLIEQRERTVQAADSQPAPDQPASEPLPSNGHSVSDNLLADRLARPNVSRRRD
Ga0210407_1000003925F017859AGGAGMNRTQTESRATDTSVAELALRELQDRIEASGLESSYADLVCDLCVGQVSLEKAFGEIHQKAMERMVELLDTRILEDEIALEACLEKIAQESERVAWSALEQGTEALREGLAILEGAESLGDGGYVN
Ga0210407_1000003937F024591N/AMSRRSRFLLIAMSTAFGIAALGLLIGMCYDLYLVSIRHVQLENVLGTSIAYNKTLGGFGILGMLFFFAFLLSAIADKKQDKPR
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