NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10000042

Scaffold Ga0210407_10000042


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10000042 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)184305
Total Scaffold Genes176 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)121 (68.75%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000795Metagenome / Metatranscriptome887Y
F000872Metagenome / Metatranscriptome851Y
F001265Metagenome / Metatranscriptome735Y
F001632Metagenome / Metatranscriptome660Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_10000042113F000795N/AMSTQTIELDGFEMEIASELYCERGGDHSELVDIARTDRRRLGHNVDESAVLCVRCMKAIPLKA
Ga0210407_1000004213F000872GGAGGVPKSATILAFVVLILFSIPMAAQFNGLLPNGNVYAGVSYGQLTDQINKQSYRGFEGSFEALPFTRFPRIGLVADAGGYFRTGVTQYTFLGGPRLSFSSGKWRPFVHAMAGIRHVNSEGFIYNPLAIDVGGGADYKLPFKNFSWRVQGDYLRGHYGSASQNDYRASTGIVWRF
Ga0210407_1000004251F001632AGGAGMFPNRWKFALASIVFVAILFPVPARAAGPTDQLAYCSYVMEQAQAQRDLLRTPIAAAGFTQPETGLPLQLVGGASVGVSDIRKASLTMEAARKNCELYKATTGAQQEVQYALPSLEKEALRNRLTLIEQASKSLDALMEKTAKMVDAQNATRLMLFSLQTTKIKLDADRAETASKITALYVPPLSDKPLKDLVAEKQSSEANEQKALDKLSRQSNWDVALSVGVHQQVNPVAQGAQPYGAVSVNYNLASRAINKHLDRAVEAYSEWKKVQEGDVVRNMEVLRQQLEESVTAQESKLKSLQEESGQIDKSLHLVGDPDTSAALDFHNQLTAAELLLQIETGDTSFRIDRLHEYLTKNY
Ga0210407_1000004299F001265GAGMAIHDMDDLHLRIARVTEDLRTIQQELNCAAMQAPSDPELMESLNSLAETEPIDTLRSALDQMRHFLWFYSQVMSNEPELGDKLRQASAAKTASDEKPKTKTGSSFLDQLSRSDEAMLLHHLADARRRKPN
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