NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10000065

Scaffold Ga0210407_10000065


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10000065 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)139249
Total Scaffold Genes142 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)87 (61.27%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000136Metagenome / Metatranscriptome1961Y
F000870Metagenome / Metatranscriptome851Y
F005428Metagenome / Metatranscriptome401Y
F037871Metagenome / Metatranscriptome167Y
F087516Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_100000651F000870GGAGMDSSTDHRKLQEKTARQLIWTSNHSFHGWTCSQCEWNSALPTLLNDPAAKTAYDRLAAGKFKDHKCADHLSRLGSADDADSFTPRIRKLVTQGFKPKDAVELFLQEVALEYRNQPKVLAQAKTDAEDFLRRVRAGLI
Ga0210407_1000006511F000136GAGGMAKSKLSILYGEGDSEVLTAQAAAMEKAGHGVHTAEGRKAVMEALKKGPFDLVVLGATLSRNDRHHLPYMVKKANSETSVLVMHADGSRHPYVDACTDTGASLETVLSRIESMKIVGKTPAAAGAAAGR
Ga0210407_1000006512F037871N/AMKRTDEDQQFGAEFAKRLRPFYQKALAEGQTEKKFARRLGVDRGGLQRYLKESAMPSFRTIVLAYREFGIAIPYASTEPAPLVSGRSKRRRKTLALQMDLPLTIEAPHGEINVVIKRQSPQRIRLQLRAQSLG
Ga0210407_10000065138F005428N/AVNRLSIALVCYVVLGALAWTTLTEPKLRAGTLVILALFAVKSVLRRNDVLHADKEGDAD
Ga0210407_1000006594F087516AGGAGGMKNTILTAAVIAFCLATAAGQAKVLTNDPLTGLALIPATVLFKNVGNEPDKMPDGQVCKSKTQGNFYSLSTVMNPANAIKMDAAAAWYASHLSGFKKIQGYADGRSQIAFYNADGTLVILLTGQLGAQGENTDAFSVSYERSQPGLSVKTIVGLTQGKFVCN
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